List of publications

2008

08/01 Aliouat-Denis CM, Chabé M, Demanche C, Aliouat EM, Viscogliosi E, Guillot J, Delhaes L, Dei-Cas E. 2008. Pneumocystisspecies, coevolution and pathogenic power. Infect. Genet. Evol. 8, 708-726.

08/02 Boorom K, Smith H, Nimri L, Viscogliosi E, Spanakos G, Parkar U, Li LH, Zhou XN, Ok U, Leelayoova S, Jones M. 2008. Oh my aching gut: irritable bowel syndrome, Blastocystis, and asymptomatic infection. BMC Parasit. Vectors. 1, 40.(highly accessed)

08/03 Boury D, Dei-Cas E. 2008. Current bioethical issues in parasitology. Parasite. 15, 489-494.

08/04 Collot M, Sendid B, Fievez A, Savaux C, Standaert-Vitse A, Tabouret M, Drucbert AS, Danzé PM, Poulain D, Mallet JM. 2008.Biotin sulfone as a new tool for synthetic oligosaccharide immobilization: application to multiple analysis profiling and surface plasmonic analysis of anti-Candida albicans antibody reactivity against alpha and beta (1–>2) oligomannosides. J. Med. Chem. 51, 6201-6210.

08/05 Dei-Cas E, Dupouy-Camet J. 2008. Foreword. Parasite. 15, 185-186

08/06 Delhaes L, Harun A, Chen S, Nguyen Q, Maszewska K, Halliday C, Robert V, Sorrell T, Slavin M, Health C. 2008. Auscedo Study Group TA, Meyer W. Molecular typing of Australian Scedosporium isolates showing genetic variability and numerous S. aurantiacum. Emerg. Infect. Dis. 14, 282-290.

08/07 Duboucher C, Pierce RJ, Capron M, Dei-Cas E, Viscogliosi E. 2008. Recent advances in pulmonary trichomonosis. Trends Parasitol. 24, 201-202.

08/08 Dufernez F, Derelle E, Noël C, Sanciu G, Mantini C, Dive D, Soyer-Gobillard MO, Capron M, Pierce RJ, Wintjens R, Guillebault D,Viscogliosi E. 2008. Molecular characterization of iron-containing superoxide dismutases in the heterotrophic dinoflagellateCrypthecodinium cohnii. Protist. 159, 223-238.

08/09 Harry M, Dupont L, Romana C, Demanche C, Mercier A, Livet A, Diotaiuti L, Noireau F, Emperaire L. 2008. Microsatellite markers in Triatoma pseudomaculata (Hemiptera, Reduviidae, Triatominae), Chagas’ disease vector in Brazil. Infect. Genet. Evol. 8, 672-675.

08/10 Jawhara S, Thuru X, Standaert-Vitse A, Jouault T, Sendid B, Mordon S, Desreumaux P, Poulain D. 2008. Candida albicanscolonisation and colonic inflammation induced by dextran sulphate sodium in wild type and galectin 3-deficient mice. J. Infect. Dis. 197, 972-980.

08/11 Nevez G, Chabé M, Rabodonirina M, Virmaux M, Dei-Cas E, Hauser P, Totet A. 2008. Nosocomial Pneumocystis jiroveciiinfections. Parasite. 15, 359-365.

08/12 Sendid B, Dotan N, Nseir S, Savaux C, Vandewalle P, Standaert-Vitse A, Zerimech F, Guery BP, Dukler A, Colombel JF, Poulain D. 2008. Antibodies against glucan, chitin, and Saccharomyces cerevisiae mannan as new biomarkers of Candida albicans infection that complement tests based on C. albicans mannan. Clin. Vaccine Immunol. 15, 1868-1877.

08/13 Vandewalle P, Colombel JF, Joossens S, Standaert-Vitse A, Collot M, Halfvarson J, Hadrich I, Landers C, Vermeire S, Rutgeerts P, Targan S, Mallet JM, Chamaillard M, Sendid B, Poulain D. 2008. Detection of antisynthetic mannoside antibodies (ASMA) reveals heterogeneity in the ASCA response of Crohn’s Disease patients and contributes to differential diagnosis, stratification, and prediction. Am. J. Gastroenterol. 103, 949-957.

08/14 Vives MF, Caspar-Bauguil S, Aliouat EM, Escamilla R, Perret B, Dei-Cas E, Prévost MC. 2008. Hypobaric hypoxia-related impairment of pulmonary surfactant proteins A and D did not favour Pneumocystis carinii Frenkel 1999 growth in non-immunocompromised rats. Parasite. 15, 53-64.

08/15 Yéra H, Zamfir O, Bourcier T, Viscogliosi E, Noël C, Dupouy-Camet J, Chaumeil C. 2008. Characterization of humanAcanthamoeba isolates from ocular samples. Br. J. Ophthalmol. 92, 1139-1141.

 

2009

09/01 Ajzenberg D, Yéra H, Marty P, Paris L, Dalle F, Menotti J, Aubert D, Franck J, Bessières M-H, Quinio D, Pelloux H, Delhaes L,Desbois N, Thulliez P, Robert-Gangneux F, Kauffman-Lacroix C, Pujol S, Rabodonirina M, Bougnoux M-E, Cuisenier B, Duhamel C, Duong T-H, Filisetti D, Flori P, Gay-Andrieux F, Pratlong F, Nevez G, Totet A, Carme B, Dardé ML, Villena I. 2009.Genotype of 88Toxoplasma gondii isolates associated with toxoplasmosis in immunocompromised patients, and correlation with clinical findings. J. Infect. Dis. 199, 1155-1167.

09/02 Aliouat-Denis CM, Martinez A, Aliouat EM, Pottier M, Gantois N, Dei-Cas E. 2009. The Pneumocystis life cycle. Mem. Inst. Oswaldo Cruz 104, 419-426.

09/03 Bachega JFR, Navarro MV, Bleicher L, Bortoleto-Bugs RK, Dive D, Hoffmann P, Viscogliosi E, Garratt RC. 2009. Systematic structural studies of iron superoxide dismutases from human parasites and a statistical coupling analysis of metal binding specificity. Proteins 77, 26-37.

09/04 Derouiche S, Deville M, Taylor ML, Akbar H, Guillot J, Carreto-Binaghi LE, Pottier M, Aliouat EM, Aliouat-Denis CM, Dei-Cas E,Demanche C. 2009. Pneumocystis diversity as a phylogeographic tool. Mem. Inst. Oswaldo Cruz 104, 112-117.

09/05 Duarte-Escalante E, Zúñiga G, Ramírez ON, Córdoba S, Refojo N, Arenas R, Delhaes L, Reyes-Montes MR. 2009. Population structure and diversity of the pathogenic fungus Aspergillus fumigatus isolated from different sources and geographic origins. Mem. Inst. Oswaldo Cruz 104, 427-433.

09/06 Dupouy-Camet J, Olesen OF, Dei-Cas E, Loiseau PM, Mas-Coma S. 2009. Perspectives for parasitology and parasitology networks in Europe. Trends Parasitol. 25, 293-295.

09/07 Fréalle E, Decrucq K, Botterel F, Bouchindhomme B, Camus D, Dei-Cas E, Costa JM, Yakoub-Agha I, Bretagne S, Delhaes L. 2009. Diagnosis of invasive aspergillosis using bronchoalveolar lavage in haematology patients: influence of bronchoalveolar lavage human DNA content on real-time PCR performance. Eur. J. Clin. Microbiol. Infect. Dis. 28, 223-232.

09/08 Grenouillet F, Botterel F, Crouzet J, Larosa F, Hicheri Y, Ranque S, Delhaes L. 2009. Scedosporium prolificans: an emerging pathogen in France? Med. Mycol. 47, 343-350.

09/09 Heath CH, Slavin MA, Sorrell TC, Handke R, Harun A, Phillips M, Nguyen Q, Delhaes L, Ellis D, Meyer W, Chen SC; AustralianScedosporium Study Group. 2009. Population-based surveillance for scedosporiosis in Australia: epidemiology,disease manifestations and emergence of Scedosporium aurantiacum infection. Clin. Microbiol. Infect. 15, 689-693.

09/10 Jiménez JC, Pinon A, Dive D, Grzych JM, Capron M, Di Prisco MC, Dei-Cas E. 2009. Specific IgA antibody response in children infected with Giardia intestinalis after treatment with Secnidazol. Am. J. Trop. Med. Hyg. 80, 11-15.

09/11 Jiménez JC, Fontaine J, Grzych JM, Capron M, Dei-Cas E. 2009. Antibody and cytokine responses in BALB/c mice immunized with the excreted/secreted proteins of Giardia intestinalis : the role of cysteine proteases. Ann. Trop. Med. Parasitol. 103, 1-11.

09/12 Kaneshiro E, Dei-Cas E. 2009. The 10th International Workshops on Opportunistic Protists (IWOP-10). Euk. Cell 8, 426-428.

09/13 Magnino S, Colin P, Dei-Cas E, Madsen M, Prieto-Maradona M, McLauchlin J, Nöckler K, Tsigarida K, Vanopdenbosch E, Van Peteghem C. 2009. Biological risks associated with consumption of reptile products. Int. J. Food Microbiol. 134, 163-175.

09/14 Mantini C, Dalia-Cornette J, Noda S, Van der Heijden HMJF, Dei-Cas E, Landman WJM, Ohkuma M, Viscogliosi E. 2009. Molecular identification and phylogenetic relationships of trichomonad isolates of galliform birds inferred from nuclear small subunit rRNA gene sequences. Parasitol. Res. 106, 163-170.

09/15 Mantini C, Souppart L, Noël C, Duong TH, Mornet M, Carroger G, Dupont P, Masseret E, Goustille J, Capron M, Duboucher C,Dei-Cas E, Viscogliosi E. 2009. Molecular characterization of a new Tetratrichomonas species in a patient with empyema. J. Clin. Microbiol. 47, 2336-2339.

09/16 Martinez A, Aliouat EM, Pottier M, Gantois N, Pinçon C, Standaert-Vitse A, Dei-Cas E, Aliouat-Denis CM. 2009. High-speed cell sorting of infectious trophic and cystic forms of Pneumocystis carinii. J. Eukaryot. Microbiol. 56, 446-453.

09/17 Montes-Cano MA, Chabé M, Fontillon-Alberdi M, de la Horra C, Respaldiza N, Medrano FJ, Varela JM, Dei-Cas E, Calderon EJ. 2009. First molecular evidence of Pneumocystis jirovecii vertical transmission in Human. Emerg. Infect. Dis. 15, 125-127.

09/18 Noda S, Mantini C, Bordereau C, Kitade O, Dolan MF, Viscogliosi E, Ohkuma M. 2009. Molecular phylogeny of parabasalids with emphasis on the order Cristamonadida and its complex morphological evolution. Mol. Phylogenet. Evol. 52, 217-224.

09/19 Pihet M, Carrere J, Cimon B, Chabasse D, Delhaes L, Symoens F, Bouchara JP. 2009. Occurrence and relevance of filamentous fungi in respiratory secretions of patients with cystic fibrosis – a review. Med. Mycol. 47, 387-397.

09/20 Poulain D, Sendid B, Standaert-Vitse A, Fradin C, Jouault T, Jawhara S, Colombel JF. 2009. Yeasts: Neglected Pathogens. Dig. Dis. 27, 104-110.

09/21 Sendid B, Jouault T, Standaert-Vitse A, Fradin C, Colombel JF, Poulain D. 2009. Anti-glycan antibodies establish an unexpected link between C. albicans and Crohn disease. Med. Sci. 25, 473-481.

09/22 Souppart L, Sanciu G, Cian A, Wawrzyniak I, Delbac F, Capron M, Dei-Cas E, Boorom K, Delhaes L, Viscogliosi E. 2009. Molecular epidemiology of human Blastocystis isolates in France. Parasitol. Res. 105, 413-421.

09/23 Standaert-Vitse A, Sendid B, Joossens M, François N, Vandewalle-El Khoury P, Branche J, Van Kruiningen H, Jouault T, Rutgeerts P, Gower-Rousseau C, Libersa C, Neut C, Broly F, Chamaillard M, Vermeire S, Poulain D, Colombel JF. 2009. Candida albicanscolonization and ASCA in familial Crohn’s disease. Am. J. Gastroenterol. 104, 1745-1753.

09/24 Yéra H, Filisetti D, Bastien P, Ancelle T, Thulliez P, Delhaes L. 2009. Multicenter comparative evaluation of five commercial methods for toxoplasmic DNA extraction in amniotic fluid. J. Clin. Microbiol. 47, 3881-3886.

 

2010

10/01 ANOFEL Cryptosporidium National Network.2010. Laboratory-based surveillance for Cryptosporidium in France, 2006-2009. Euro Surveill. 15, 19642.

10/02 Borman A, Palmer M, Delhaes L, Horré R, Bouchara JP.2010. Lack of standardization in the procedures for mycological examination of sputum samples from CF patients: a possible cause for variations in the prevalence of filamentous fungi. Med. Mycol. 48 suppl 1, S88-97.

10/03 Calderón EJ, Dei-Cas E. 2010. Pneumocystis infection: unraveling the colonization-to-disease shift. Expert. Rev. Anti Infect. Ther. 8, 259-262.

10/04 Calderón E, Gutiérrez-Rivero S, Durand-Joly I, Dei-Cas E. 2010. Pneumocystis infection in humans: diagnosis and treatment. Expert. Rev. Anti Infect. Ther. 8, 684-701.

10/05 Certad G, Creusy C, Ngouanesavanh TM, Guyot K, Gantois N, Mouray A, Chassat T, Flament N, Fleurisse L, Pinon A, Delhaes L,Dei-Cas E. 2010. Development of Cryptosporidium parvum induced gastro-intestinal neoplasia in SCID mice: severity of lesions is correlated with infection intensity. Am. J. Trop. Med. Hyg. 82, 257-265.

10/06 Certad G, Creusy C, Guyot K, Mouray A, Chassat T, Delaire B, Pinon A, Sitja-Bobadilla A, Alvarez-Pellitero P, Praet M, Cuvelier C,Dei-Cas E. 2010. Fulminant cryptosporidiosis associated with digestive adenocarcinoma in SCID mice infected with /C. parvum/ TUM1. Int. J. Parasitol. 40, 1469-1475.

10/07 Chabé M, Herbreteau V, Hugot JP, Bouzard N, Deruyter L, Morand S, Dei-Cas E. 2010. Pneumocystis carinii and Pneumocystis wakefieldiae in wild Rattus norvegicus trapped in Thailand. J. Eukaryot. Microbiol. 57, 213-217.

10/08 Delhaes L, Mraz JC, Fréalle E, Durand-Joly I, Magro L, Ajzenberg D, Dardé ML, Dei-Cas E, Yakoub-Agha I. 2010. Severe plumonary toxoplasmosis after allogeneic stem cell transplantation in two patients: from toxoplasma genotyping to clinical management. Bone Marrow Transplant.45, 580-583.

10/09 Delhaes L, Ajzenberg D, Sicot B, Bourgeot P, Dardé ML, Dei-Cas E, Houfflin-Debarge V. 2010. Severe congenital toxoplasmosis due to a Toxoplasma gondii strain with an atypical genotype: case report and review. Prenatal Diag. 30, 902-905.

10/10 Delhaes L, Fréalle E, Pinel C. 2010. Serum markers for allergic bronchopulmonary aspergillosis in cystic fibrosis: state of art and further challenges. Med. Mycol. 48 suppl 1, S77-87.

10/11 Horré R, Symoens F, Delhaes L, Bouchara JP. 2010. Fungal respiratory infections in cystic fibrosis: a growing problem. Med. Mycol. 48 suppl 1, S1-3.

10/12 Houssin T, Follet J, Follet A, Dei-Cas E, Senez V. 2010. Label-free analysis of water-polluting parasite by electrochemical impedance spectroscopy. Biosens. Bioelectron. 25, 1122-1129.

10/13 Laurent J, Stanicki D, Huang TL, Dei-Cas E, Pottier M, Aliouat EM, Vanden Eynde JJ. 2010. Bisbenzamidines as antifungal agents: are both amidines functions required to observe an anti-Pneumocystis carinii activity? Molecules. 15, 4283-4293.

10/14 Roumy V, Hennebelle T, Aliouat EM, Pottier M, Biabiany M, Joha S, Quesnel B, Khatib R, Sahpaz S, Bailleul F. 2010. Antifungal and cytotoxic activity of withanolides from Acnistus arborescens. J. Nat. Prod. 73, 1313-1317.

10/15 Sarr D, Aldebert D, Marrama L, Fréalle E, Gaye A, Brahim HO, Niang M, Dangou JM, Mercereau-Puijalon O, Lehesran JY, Jambou R. 2010. Chronic infection during placental malaria is associated with up-regulation of cycloxygenase-2. Malaria J. 9, 45.

10/16 Souppart L, Moussa H, Cian A, Sanciu G, Poirier P, El Alaoui H, Delbac F, Boorom K, Delhaes L, Dei-Cas E, Viscogliosi E. 2010. Subtype analysis of Blastocystis isolates from symptomatic patients in Egypt. Parasitol. Res. 106, 505-511.

10/17 Sterkers Y, Varlet-Marie E, Cassaing S, Brenier-Pinchart MP, Brun S, Dalle F, Delhaes L, Filisetti D, Pelloux H, Yéra H, Bastien P. 2010. Multicentric comparative analytical performance study for molecular detection of low amounts of Toxoplasma gondii from simulated specimens. J. Clin. Microbiol. 48, 3216-3222.

10/18 Sterkers Y, Varlet-Marie E, Marty P, Bastien P, ANOFEL Toxoplasma-PCR Quality Control Group. 2010. Diversity and evolution of methods and practices for the molecular diagnosis of congenital toxoplasmosis in France: a 4-year survey. Clin. Microbiol. Infect. 16, 1594-1602.

10/19 Villena I, Ancelle T, Delmas C, Garcia P, Brezin AP, Thulliez P, Wallon M, King L, Goulet V, Delhaes L. On behalf the Toxosurvey network and National Reference Centre for Toxoplasmosis. 2010. Congenital toxoplasmosis in France in 2007: first results from a national surveillance system. Euro Surveill. 15.pii, 19600.

 

2011

11/01 Chabé M, Aliouat-Denis CM, Delhaes L, Aliouat EM, Viscogliosi E, Dei-Cas E. 2011. Pneumocystis: from a doubtful unique entity to a group of highly diversified fungal species. FEMS Yeast Res. 11, 2-17.

11/02 Choukri F, Aliouat EM, Menotti J, Totet A, Gantois  N, Garin YJF, Bergeron V, Dei-Cas E, Derouin F. 2011. Dynamics ofPneumocystis carinii air shedding during experimental pneumocystosis. J. Infect. Dis. 203, 1333-1336.

11/03 Denoeud F, Roussel M, Noel B, Wawrzyniak I, Da Silva C, Diogon M, Viscogliosi E, Brochier C, Couloux A, Poulain J, Segurans B, Anthouard V, Texier C, Blot N, Poirier P, Tan KSW, Artiguenave F, Jaillon O, Aury JM, Delbac F, Wincker P, Vivares CP, El Alaoui H. 2011. Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite. Genome Biol. 12, R29 (Highly Accessed).

11/04 Fréalle E, Lestrez C, Skierlak T, Melboucy D, Guery B, Durand-Joly I, Delhaes L, Loukili N. 2011. Fungal aero-decontamination efficacy of mobile air-treatment systems. Med. Mycol. 49, 825-833.

11/05 Follet J, Guyot K, Leruste H, Follet-Dumoulin A, Hammouma-Ghelboun O, Certad G, Dei-Cas E, Halama P. 2011.Cryptosporidium infection in a veal calf cohort in France: molecular characterization of species in a longitudinal study. Vet. Res. 42, 116.

11/06 Hambÿe S, Stanicki D, Colet JM, Aliouat EM, Vanden Eynde JJ, Blankert B. 2011. Three optimized and validated (using accuracy profiles) LC methods for the determination of pentamidine and new analogs in rat plasma. Talanta. 83, 832–839.

11/07 Lu Q, van den Ende AH, de Hoog GS, Li R, Accoceberry I, Durand-Joly I, Bouchara JP, Hernandez F, Delhaes L. 2011. Revers line blot hybridization screening of Pseudoallescheria/Scedosporium species in patients with cystic fibrosis. Mycoses. 54 Suppl 3, 5-11.

11/08 Martinez A, Aliouat EM, Standaert-Vitse A, Werkmeister E, Pottier M, Pinçon C, Dei-Cas E, Aliouat-Denis CM. 2011. Ploidy of cell-sorted trophic and cystic forms of Pneumocystis carinii. PLoS ONE. 6(6), e20935.

11/09 Martínez-Esparza M, Tapia-Abellán A, Standaert-Vitse A, García-Peñarrubia P, Argüelles JC, Poulain D, Jouault T. 2011. Glycoconjugate expression on the cell wall of tps1/tps1 trehalose-deficient Candida albicans strain and implications for its interaction with macrophages. Glycobiology. 21, 796-805.

11/10 Mekinian A, Durand-Joly I, Hatron PY, Moranne O, Denis G, Dei-Cas E, Morell-Dubois S, Lambert M, Launay D, Delhaes L, Hachulla E, Queyrel V. 2011. Pneumocystis jirovecii colonization in patients with systemic autoimmune diseases: prevalence, risk factors of colonization and outcome. Rheumatology (Oxford).50, 569-577.

11/11 Meloni D, Mantini C, Goustille J, Desoubeaux G, Maakaroun-Vermesse Z, Chandenier J, Gantois N, Duboucher C, Fiori PL, Dei-Cas E, Duong TH, Viscogliosi E. 2011. Molecular identification of Pentatrichomonas hominis in two patients with gastrointestinal symptoms. J. Clin. Pathol. 64, 933-935.

11/12 Meloni D, Sanciu G, Poirier P, El Alaoui H, Chabé M, Delhaes L, Dei-Cas E, Delbac F, Luigi Fiori P, Di Cave D, Viscogliosi E. 2011. Molecular subtyping of Blastocystis sp. isolates from symptomatic patients in Italy. Parasitol. Res. 109, 613-619.

11/13 Monchy S, Sanciu G, Jobard M, Rasconi S, Gerphagnon M, Chabé M, Cian A, Meloni D, Niquil N, Christaki U, Viscogliosi E, Sime-Ngando T. 2011. Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing. Environ. Microbiol. 13, 1433-1453.

11/14 Niquil N, Kagami M, Urabe J, Christaki U, Viscogliosi E, Sime-Ngando T. 2011. Potential role of fungi in plankton food-web functioning and stability: a simulation analysis based on Lake Biwa inverse model. Hydrobiologia. 659, 65-79.

11/15 Singhal A, Aliouat EM, Herve M, Mathys V, Kiass M, Creusy C, Delaire B, Tsenova L, Fleurisse L, Bertout J, Camacho L, Foo D, Tay HC, Siew JY, Boukhouchi I, Mathema B, Dartois V, Kaplan G, Bifani P. 2011. Experimental tuberculosis in the Wistar rat: a model for protective immunity and control of infection. PLoS ONE. 6(4), e18632.

11/16 Singhal A, Mathys V, Kiass M, Creusy C, Delaire B, Aliouat EM, Dartois V, Kaplan G, Bifani P. 2011. BCG induces protection against Mycobacterium tuberculosis infection in the Wistar rat model. PLoS ONE. 6(12), e28082.

 

2012

12/01 Akbar H, Pinçon C, Aliouat-Denis CM, Derouiche S, Taylor ML, Pottier M, Carreto-Binaghi LH, González-González AE, Courpon A, Barriel V, Guillot J, Chabé M, Suarez-Alvarez RO, Aliouat EM, Dei-Cas E, Demanche C. 2012. Characterizing Pneumocystis in the lungs of bats: understanding Pneumocystis evolution and the spread of Pneumocystis organisms in mammal populations. Appl. Environ. Microbiol. 78, 8122-36.

12/02 Ampere A, Delhaes L, Soots J, Bart F, Wallaert B. 2012. Hypersensitivity pneumonitis induced by Shiitake mushroom spores. Med. Mycol. 50, 654-657.

12/03 Benamrouz S, Conseil V, Creusy C, Calderon E, Dei-Cas E, Certad G. 2012. Parasites and malignancies, a review, with emphasis on digestive cancer induced by Cryptosporidium parvum (Alveolata: Apicomplexa). Parasite. 19, 101-115.

12/04 Benamrouz S, Guyot K, Gazzola S, Mourray A, Chassat T, Delaire B, Chabé M, Gosset P, Viscogliosi E, Dei-Cas E, Creusy C, Conseil V, Certad G. 2012. Cryptosporidium parvum infection in SCID mice infected with only one oocyst: qPCR assessment of parasite replication in tissues and development of digestive cancer. PLoS ONE. 7(12), e51232.

12/05 Certad G, Benamrouz S, Guyot K, Mouray A, Chassat T, Flament N, Delhaes L, Coiteux V, Delaire B, Praet M, Cuvelier C, Gosset P, Dei-Cas E, Creusy C. 2012. Fulminant cryptosporidiosis after near-drowning: first detection of a human Cryptosporidium parvumstrain implicated in invasive gastrointestinal adenocarcinoma and cholangiocarcinoma in an experimental model. Appl. Environ. Microbiol. 78, 1746-1751.

12/06 Chabé M, Durand-Joly I, Dei-Cas E. 2012. La transmission des infections à Pneumocystis. Med. Sci. (Paris). 28, 599-604.

12/07 De Armas Y, Friaza V, Capo V, Durand-Joly I, Govín A, de la Horra C, Dei-Cas E, Calderon E. 2012. Low genetic diversity ofPneumocystis jirovecii among Cuban population based on two-locus mitochondrial typing. Med. Mycol. 50, 417-420.

12/08 Delhaes L, Monchy, S, Fréalle E, Hubans C, Salleron J, Leroy S, Prévotat A, Wallet F, Wallaert B, Dei-Cas E, Sime-Ngando T,Chabé M, Viscogliosi E. 2012. The airway microbiota in cystic fibrosis: a complex fungal and bacterial community – implications for therapeutic management. PLoS ONE. 7(4), e36313.

12/09 González-González AE, Aliouat-Denis CM, Carreto-Binaghi LE, Ramírez JA, Rodríguez-Arellanes G, Demanche C, Chabé M,Aliouat EM, Dei-Cas E, Taylor ML. 2012. An Hcp100 gene fragment reveals Histoplasma capsulatum presence in lungs of Tadarida brasiliensis migratory bats. Epidemiol. Infect. 140, 1955-1963.

12/10 Hernández-Hernández F, Fréalle E, Caneiro P, Salleron J, Durand-Joly I, Accoceberry I, Bouchara JP, Wallaert B, Dei-Cas E,Delhaes L. 2012. Prospective multicenter study of Pneumocystis jirovecii colonization among cystic fibrosis patients in France. J. Clin. Microbiol. 50, 4107-4110.

12/11 Meloni D, Poirier P, Mantini C, Noël C, Gantois N, Wawrzyniak I, Delbac F, Chabé M, Delhaes L, Dei-Cas E, Fiori PL, El Alaoui H,Viscogliosi E. 2012. Mixed human intra- and inter-subtype infections with the parasite Blastocystis sp. Parasitol. Int. 61, 719-722.

12/12 Monchy S, Grattepanche J-D, Breton E, Meloni D, Sanciu G, Chabé M, Delhaes L, Viscogliosi E, Sime-Ngando T, Christaki U. 2012. Microplanktonic community structure in a coastal system relative to a Phaeocystis bloom inferred from morphological and tag pyrosequencing methods. PLoS ONE. 7(6), e39924.

12/13 Noda S, Mantini C, Meloni D, Inoue JI, Kitade O, Viscogliosi E, Ohkuma M. 2012. Molecular phylogeny and evolution of Parabasalia with improved taxon sampling and new protein markers of actin and elongation factor-1a. PLoS ONE. 7(1), e29938.

12/14 Sitterle E, Fréalle E, Cabaret O, Foulet F, Cremer G, Chermette R, Guillot J, Delhaes L, Botterel F. 2012. Trichophyton bullosum: a new zoonotic dermatophyte species. Med. Mycol. 50, 305-309.

12/15 Vasseur F, Sendid B, Jouault T, Standaert-Vitse A, Dubuquoy L, Francois N, Gower-Rousseau C, Desreumaux P, Broly F, Vermeire S, Colombel JF, Poulain D. 2012. Variants of NOD1 and NOD2 genes display opposite associations with familial risk of Crohn’s disease and anti-Saccharomyces cerevisiae antibody levels. Inflamm. Bowel Dis. 18, 430-438.

12/16 Wawrzyniak I, Texier C, Poirier P, Viscogliosi E, Tan KSW, Delbac F, El Alaoui H. 2012. Characterization of two cysteine proteases secreted by Blastocystis sp. ST7, a human intestinal parasite. Parasitol. Int. 61, 437-442.

 

2013

13/01 Abedini A, Roumy V, Mahieux S, Biabiany M, Standaert-Vitse A, Rivière C, Sahpaz S, Bailleul F, Neut C, Hennebelle T. 2013. Rosmarinic acid and its methyl ester as antimicrobial components of the hydro-methanolic extract of Hyptis atrorubens Poit. (Lamiaceae). Evid. Based Complement. Alternat. Med. In Press

13/02 Aliouat-Denis CM, Chabé M, Delhaes L, Dei-Cas E. 2013. Aerially-transmitted human fungal pathogens in humans: what can we learn from metagenomics and comparative genomics. Rev. Iberoam. Micol. In press (RIAM-D-13-00096).

13/03 Benamrouz S, Conseil V, Chabé M, Praet M, Audebert C, Blervaque R, Guyot K, Gazzola S, Mouray A, Chassat T, Delaire B, Goetinck N, Gantois N, Viscogliosi E, Cuvelier C, Dei-Cas E, Creusy C, Certad G. Cryptosporidium parvum-induced digestive adenocarcinoma in a rodent model: molecular, immunohistochemical and ultrastructural approaches to mechanisms. Dis. Model Mech. In revision.

13/04 Biabiany M, Roumy V, Hennebelle T, François N, Sendid B, Pottier M, Aliouat EM, Rouaud I, Lohézic-Le Dévéhat F, Joseph H, Bourgeois P, Saphaz S, Bailleul F. 2013. Antifungal activity of 10 Guadeloupean plants on mycoses. Phytotherapy Res. In press DOI: 10.1002/ptr.4906.

13/05 Christaki U, Ar Kormas K, Genitsaris S, Georges C, Sime-Ngando T, Viscogliosi E, Monchy S. 2013. Winter-summer succession of unicellular eukaryotes in a meso-eutrophic coastal system. Microb. Ecol. Oct 1. [Epub ahead of print].

13/06 Delhaes L, Yéra H, Ache S, Tsatsaris V, Houfflin-Debarge V. 2013. Contribution of molecular diagnosis to congenital toxoplasmosis. Diagn. Microbiol. Infect. Dis. 76, 244-247.

13/07 Demanche C,Deville M,Michaux J, Barriel V, Pinçon C, Aliouat-Denis CM, Pottier M, Noël C, Viscogliosi E, Aliouat EM, Dei-Cas E, Morand S, Guillot J. 2013. What do Pneumocystisorganisms tell us about the phylogeography of their hosts? The case of the woodmouse Apodemus sylvaticus in continental Europe and western Mediterranean islands. PLoS ONE. Submitted.

13/08 El Safadi D, Meloni D, Poirier P, Osman M, Cian A, Gaayeb L, Wawrzyniack I, Delbac F, El Alaoui H, Delhaes L, Dei-Cas E, Mallat H, Dabboussi F, Hamze M, Viscogliosi E. 2013. Molecular epidemiology of Blastocystis in Lebanon and correlation between subtype 1 and gastrointestinal symptoms. Am. J. Trop. Med. Hyg. 88, 1203-1206.

13/09 El Safadi D, Gaayeb L, Meloni D, Cian A, Poirier P, Wawrzyniak I, Delbac F, Dabboussi F, Delhaes L, Hamze M, Riveau G,Viscogliosi E. Children of Senegal River Basin show the highest prevalence of Blastocystis sp. ever observed worldwide. BMC Infect Dis. Submitted.

13/10 Fréalle E, Aliouat-Denis CM, Delhaes L, Hot D, Dei-Cas E. 2013. Transcriptomic insights into the oxidative response of stress-exposed Aspergillus fumigatus. Curr. Pharm. Des. 19, 3713-3737.

13/11 Fricker-Hidalgo H, Cimon B, Chemla C, Darde ML, Delhaes L, L’ollivier C, Godineau N, Houze S, Paris L, Quinio D, Robert-Gangneux F, Villard O, Villena I, Candolfi E, Pelloux H; the network from the French National Reference Center for Toxoplasmosis. 2013. Toxoplasma seroconversion with negative or transient immunoglobulin M in pregnant women: myth or reality? A French multicenter retrospective study. J. Clin. Microbiol. In press.

13/12 González-González AE, Aliouat-Denis CM, Ramírez-Bárcenas JA, Demanche C, Carreto-Binaghi LE, Akbar H, Derouiche S, Chabé M, Aliouat EM, Dei-Cas E, Taylor ML. 2013. Histoplasma capsulatum and Pneumocystis spp. co-infection in Wild Bats from Argentina, French Guyana, and Mexico. BMC Infect. Dis. In revision.

13/13 González-González AE, Ramírez-Bárcenas JA, Aliouat-Denis CM, Demanche C, Aliouat EM, Dei-Cas E, Chabé M, Taylor ML. 2013. Molecular detection of Histoplasma capsulatum in the lung of a free-ranging common noctule (Nyctalus noctula) from France using the Hcp100 gene. J. Zoo Wildlife Med. 44, 15-20.

13/14 Grellet A, Polack B, Feugier A, Boucraut-Baralon C, Grandjean D, Vandewinckel L, Cian A, Meloni D, Viscogliosi E. 2013. Prevalence, risk factors of infection and molecular characterization of trichomonads in puppies from French breeding kennels. Vet. Parasitol. 197, 418-426.

13/15 Martinez A, Halliez M, Aliouat EM, Chabé M, Standaert-Vitse A, Fréalle E, Gantois N, Pottier M, Pinon A, Dei-Cas E, Aliouat-Denis CM. 2013. Growth and airborne transmission of cell-sorted life cycle stages of Pneumocystis carinii. PLoS ONE. In press

13/16 Mary C, Chapey MC, Dutoit E, Guyot K, Hasseine L, Jeddi F, Menotti J, Paraud C, Pomares C, Rabodonirina M, Rieux A, Derouin F; for the ANOFEL Cryptosporidium National Network. 2013. Multicentric evaluation of a new real-time PCR assay for quantification of Cryptosporidium sp and identification of Cryptosporidium parvum and hominis. J Clin Microbiol. 51, 2556-2563.

13/17 Menotti J, Emmanuel A, Bouchekouk C, Chabé M, Choukri F, Pottier M, Sarfati C, Aliouat EM, Derouin F. 2013. Evidence of airborne excretion of Pneumocystis carinii during infection in immunocompetent rats. Lung involvement and antibody response. PLoS ONE 8(4), e62155.

13/18 Poirier P, Meloni D, Nourrisson C, Wawrzyniak I, Viscogliosi E, Livrelli V, Delbac F. Molecular subtyping of Blastocystis spp. Using a rDNA marker from the mitochondria-like organelle genome. Parasitology. In press.

13/19 Poirier P, Roussel M, Wawrzyniak I, Viscogliosi E, El Alaoui H, Texier C, Delbac F. Deciphering the genetic diversity, epidemiology and pathogenesis of the human parasite Blastocystis spp.: the contribution of genomics. Infect. Genet. Evol. In revision.

13/20 Profizi C, Cian A, Meloni D, Hugonnard M, Lambert V, Groud K, Gagnon AC, Viscogliosi E, Zenner L. 2013. Prealence ofTritrichomonas fœtus infections in French catteries. Vet. Parasitol. 196, 50-55.

13/21 Sobanski V, Ajzenberg D, Delhaes L, Bautin N, Just N. 2013. Severe toxoplasmosis in immunocompetent hosts: be aware of atypical strains. Am. J. Respir. Crit. Care Med. 15, 1143-1145.

13/22 Stanicki D, Pottier M, Gantois N, Pinçon C, Forge D, Mahieu I, Boutry S, Vanden Eynde JJ, Martinez A, Dei-Cas E, Aliouat EM. 2013. Diamidines versus monoamidines as anti-Pneumocystis agents: an in vivo study, Pharmaceuticals, 6, 837-850.

13/23 Vargas SL, Ponce CA, Gallo M, Pérez F, Astorga JF, Bustamante R, Chabé M, Durand-Joly I, Iturra P, Miller RF, Aliouat EM, Dei-Cas E. 2013. Near-universal prevalence of Pneumocystis and associated increase in mucus in the lungs of infants with sudden unexpected death. Clin. Infect. Dis. 56, 171-179.

13/24 Vasseur F, Sendid B, Broly F, Gower-Rousseau C, Sarazin A, Standaert-Vitse A, Colombel JF, Poulain D, Jouault T. 2013. The CARD8 p.C10X mutation associates with a low anti-glycans antibody response in patients with Crohn’s disease. BMC Med. Genet. In press.

13/25 Villard O, Breit L, Cimon B, Franck J, Fricker-Hidalgo H, Godineau N, Houze S, Paris L, Pelloux H, Villena I, Candolfi E; French National Reference Center for Toxoplasmosis Network. Comparison of four commercially available avidity tests for Toxoplasma gondii-specific IgG antibodies. Clin. Vaccine Immunol. 20, 197-204.

13/26 Wawrzyniak I, Poirier P, Viscogliosi E, Meloni D, Texier C, Delbac F, El Alaoui H. 2013. Blastocystis, an unrecognized parasite: an overview of pathogenesis and diagnosis. Ther. Adv. Infect. Dis. 1, 167-178.

13/27 Xiao J, Viscidi RP, Kannan G, Pletnikov MV, Li Y, Severance EG, Yolken RH, Delhaes L. 2013. The Toxoplasma MAG1 peptides induce sex-based humoral immune response in mice and distinguish active from chronic human infection. Microbes Infect. 15, 74-83.

 

Publications in national journals

 

2008

08/01 Aliouat-Denis CM, Demanche C, Courpon A, Chabé M, Guillot J, Dei-Cas E, Aliouat EM. 2008. Microchampignons et chauves-souris. Symbioses 21, 74.

08/02 Kauffmann-Lacroix C, Bousseau A, Dalle F, Brenier-Pinchart MP, Delhaes L, Machouart M, Gari-Toussaint M, Datry A, Lacroix C, Hennequin C, Toubas D, Morin O. 2008. Prevention of fungal infections related to the water supply in French hospitals. Presse Med. 37, 751-759.

2009

09/01 Chabé M, Nevez G, Totet A, Fréalle E, Delhaes L, Aliouat EM, Dei-Cas E. 2009. Pneumocystis transmission. J. Mycol. Med. 19, 276-284.

09/02 Réseau Cryptosporidies ANOFEL: Accoceberry I, Angoulvant A, Aubert D, Azenar C, Basset D, Beaudeau P, Berry A, Boireau P, Bonnin A, Botterel F, Bougnoux ME, Buffet P, Cambon M, Carme B, Certad G, Chartier C, Couprie B, Datry A, Dalle F, Dardé ML, De Gentile L, De Montbrison F, De Valk H, Degeilh B, Dei-Cas E, Desbois N, Derouin F, Dutoit E, Dewitte JM, Duhamel C, Dupouy-Camet J, Duong TH, Faussard A, Favennec L, Flori P, Gantois N, Gargala G, Ghelboun O, Guyot K, Haoucine D, Houzé S, Jamet D, Kapel N, Le Fichoux Y, Linas MD, Magne D, Mary C, Menotti J, Miegeville M, Million L, Mougeot G, Nevez G, Nicolas M, Paraud C, Pinel C, Rabodonirina M, Thellier M, Raccurt C, Rodier MH, Sarfati C, Totet A, Villard O, Villena I, Yéra H. 2009. Epidémiologie de la cryptosporidiose humaine en France en 2006 et 2007: données du réseau Cryptosporidies Anofel / Human cryptosporidiosis in France in 2006-2007: data from the ANOFEL Cryptosporidium Network. Bull. Épidémiol. Heb. 6 janv.p 8-11.

2010

10/01 Dei-Cas E. 2010.Ethique du vivant et épistémologie de la biologie. Ethique et Santé. 7, 24-30.

10/02 Delhaes L, Leroy S, Caneiro P, Ache S, Bruge J, Fréalle E, Van Grunderbeeck N, Dei-Cas E, Wallaert B. 2010. Conduite à tenir face au risque d’aspergillose pulmonaire chez un patient atteint de maladie de Wegener. J. Mycol. Med. 20, 231-234.

10/03 Delhaes L, Berry A, Dutoit E, Leclerc F, Beaudou J, Camus D, Benoit-Vical F. 2010. Paediatric imported malaria: a usual delayed diagnosis. Med. Maladies Infect. 40, 155-158.

10/04 Mekinian A, Queyrel V, Durand-Joly I, Moranne O, Denis G, Delhaes L, Morell-Dubois S, Lambert M, Launay D, Hachulla E, Hatron PY. 2010. Positive Pneumocystis jirovecii PCR in immunocompromised patients with a systemic disease: infection or colonisation? Rev. Med. Interne. 31, 194-199.

10/05 Van Grunderbeeck N, Conseil V, Leroy S, Wallaert B, Delhaes L. 2010. The fungal risk in cystic fibrosis: a pilot study. Ann. Biol. Clin. (Paris) 68, 157-162.

2011

11/01 Blanc AL, Delhaes L, Copin MC, Stach B, Faivre JB, Wallaert B. 2011. Interstitial lung disease due to domestic moulds. Rev. Mal. Respir. 28, 913-918.

11/02 Dei-Cas E, Martinez A, Chabé M, Aliouat EM, Demanche C, Aliouat CM. 2011. Research on the life cycle and transmission ofPneumocystis (fungi: ascomycota). Mensaje Bioquímico 35, 93-106.

11/03 Noda S, Viscogliosi E, Ohkuma M. 2011. Molecular phylogeny and evolution of Parabasalia with new protein markers. Jpn. J. Protozool. 44, 54-55.

2012

12/01 Bezé F, Chabé M, Delhaes L. 2012. Antibacterial immunity in respiratory tract: what role for the myeloid diffentiation primary response protein 88 (MyD88) adaptor ? Ann. Biol. Clin. (Paris) 70, 245-250.

12/02 Garabedian C, Le Goarant J, Delhaes L, Rouland V, Vaast P, Valat AS, Subtil D, Houfflin-Debarge V. 2012. Periconceptional toxoplasmic seroconversion: about 79 cases. J. Gynecol. Obstet. Biol. Reprod. (Paris) 41, 546-552.

12/03 Guyot K, Sarfati C, Derouin F. 2012. Actualités sur l’épidémiologie et le diagnostic de la cryptosporidiose. Feuillets de Biologie 163, 21-29.

12/04 Meloni D, Di Cave D, Fiori PL, Viscogliosi E. 2012. Blastocystis sp.: a world yet to be discovered. Mappe Parassitologiche. 18, 5154.

 

 

Book chapters

 

2008

08/01 Dei-Cas E, Chabé M, Durand-Joly I, Aliouat-Denis CM, Aliouat EM. 2008. Pneumocystis y Pneumocystosis. In: Actualidades en MicologiaMédica, 4th edition, Méndez-Tovar LJ, Lopez Martinez R, Hernandez Hernandez F (eds.), Faculté de Médecine, UNAM, Mexico DF, p 287-295.

2009

09/01 Duboucher C, Dei-Cas E, Viscogliosi E. 2009. On the finding of trichomonads as co-infecting agents in Pneumocystispneumonia. In: AIDS-Related Opportunistic Infections, Galanda CD (ed.), Nova Biomedical, Nova Science Publishers, New York, p 81-92.

2010

10/01 Creusy C, Certad G, Guyot K, Dei-Cas E. 2010. Parasites and oncogenesis with a special reference to gastro-intestinal neoplasia induced by Cryptosporidium parvum. In: Detection of Bacteria, Viruses, Parasites and Fungi, Viola-Magni M (ed.), NATO Series Science for Peace, Springer, Berlin, p 381-388.

10/02 Dei-Cas E, Aliouat CM, Certad G, Creusy C, Guyot K. 2010. Infectious forms of parasites in food: man embedded in ecosystems.In: Detection of Bacteria, Viruses, Parasites and Fungi, Viola-Magni M. (ed.), NATO Series Science for Peace, Springer, Berlin, p 299-332.

10/03 Dei-Cas E, Chabé M, Durand-Joly I, Aliouat-Denis CM, Aliouat EM. 2010. Pneumocystis y Pneumocistosis. In: Actualidades en MicologiaMédica– 5ème édition. Méndez-Tovar J, Lopez-Martinez R, Hernandez-Hernandez F (eds.). VIII Diplomado en MicologiaMédica ‘Dr Teofilo Herrera’. Editions de la Faculté de Médecine (UNAM), p 289-298 (ISBN: 978-607-02-1416-5).

10/04 Singahl A, Aliouat EM, Creusy C, Kaplan G, Bifani P. 2010. Histopathological manisfestation in pulmonary tuberculosis in rats.In: A Color Atlas of Comparative Pathology of Pulmonary Tuberculosis. Leong J, Dartois V, Dick T (eds.), Taylor and Francis, p 128-157.

 

2011

11/01 Auffray JC, Blasdell K, Bordes F, Chabé M, Chaisiri K, Charbonnel N, Chaval Y, Claude J, Cosson JF, Dei-Cas E, Desquesnes M, Dobigny G, Douangboupha B, Galan M, Haukisalmi V, Henttonen H, Herbreteau V, Hugot JP, Jiyipong T, Latinne A, Michaux J, Milocco C, Morand S, Pagès M, Phoophitpong D, Pumhom P, Salvador AR, Soonchan S, Suputtamongkol Y, Waengsothorn S, Waywa D, Xuéreb A. 2011. Protocols for field and laboratory rodent studies. Herbreteau V, Jittapalapong S, Rerkamnuaychoke W, Chaval Y, Cosson JF, Morand S (eds.), Kasetsart University Press, Bangkok.

11/02 Calderón EJ, Varela JM, Durand-Joly I, Dei-Cas E. 2011. Pneumocystis jirovecii Pneumonia. In: Pneumonia: Symptoms, Diagnosis and Treatment, Suárez ML, Ortega SM (eds.), Public Health in the 21st Century, Nova Biomedical, Nova Science Publishers, p 1-36.

11/03 Chabé M, Aliouat-Denis CM, Dei-Cas E. 2011. Taphrinomycotina (formerly Archiascomycetes) Ascomycota, Taphrinomycotina, Pneumocystidales. Genus: PNEUMOCYSTIS. In: Atlas of Clinical Fungi, De Hoog GS, Guarro J, Gené J, Figueras MJ (eds.), 3rd edition. Electronic version.

11/04 Varela JM, Medrano FJ, Dei-Cas E, Calderón EJ. 2011. Pneumocystis jirovecii Pneumonia in AIDS Patients. In: Microbes, Viruses and Parasites in AIDS Process, Zajac V (Ed.), ISBN: 978-953-307-601-0, InTech. p 113-142.

2012

12/01 Chabé M, Hugot JP, Dei-Cas E. 2012. Pneumocystis molecular phylogeny: a way to understand both pneumocystosis natural history and host taxonomy. In: New Frontiers of Molecular Epidemiology of Infectious Diseases, Morand S et al. (eds.), Springer Science+Business Media BV, p 149-178.

2013

13/01 Certad G, Osman M, Benamrouz S. 2013. Pathogenesis of Cryptosporidium in humans. In: Emerging and Re-Emerging Human Infections. John Wiley and Sons/Wiley Blackwell Press, in press.

13/02 Chabé M, Delhaes L, Durand-Joly I, Dei-Cas E. 2013. Epidémiologie des Pneumocystoses. In: Epidémiologie des maladies parasitaires – III – Parasitoses et Immunodépression, Ripert C (ed.), Editions Médicales Internationales, Cachan, in press.

13/03 Dei-Cas E, Verrez-Bagnis V. 2013. Les parasites des poissons. Chapitre 4. In: Les produits aquatiques: caractéristiques, transformation, valorisation. Médale F, Lésel R. Série science et technique. Ed. Lavoisier, in press.

13/04 Standaert-Vitse A, Aliouat EM, Chabé M. 2013. Pneumocystis et la pneumocystose chez l’homme. Moniteur des Pharmacies – Internat, 4ème édition, Tome 3 Infectiologie. Ed. Wolters Kluwer, in press.

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